The 00010 transcript set (experimental/fasta/00010.fasta) holds ten de novo-assembled transcripts. This article shows what one run of the workflow fasta-stats-report produces: FASTAStatistics computes the statistics once and three endpoints turn them into a summary table, a per-record table and a histogram. Every caption links to the record of that run, and re-running the workflow on the same data reproduces the same content hashes.

1 Summary

statisticvalue
number_of_elements10
total_sequence_length9,618
avg_seq_len961.8
min_seq_len610
max_seq_len1,570
residue:A2,486
residue:C2,259
residue:G2,205
residue:T2,668
Table 1. FASTA statistics Record count, length summary and residue counts of the input file. provenance open workflow

2 Every record

headerlengthACGT
>pdi2001denovo1,124343220164397
>pdi2002denovo61017211886234
>pdi2003denovo912218262205227
>pdi2004denovo1,570432333358447
>pdi2005denovo836148225288175
>pdi2006denovo750178217197158
>pdi2007denovo1,198335252280331
>pdi2008denovo1,090233325290242
>pdi2009denovo615169125120201
>pdi2010denovo913258182217256
Table 2. Per-record statistics Length and residue counts of every record. provenance open workflow

3 Length distribution

Length distribution [610, 730): 2 [730, 850): 2 [850, 970): 2 [970, 1090): 0 [1090, 1210): 3 [1210, 1330): 0 [1330, 1450): 0 [1450, 1570]: 1 0 1 2 3 600 800 1000 1200 1400 1600 length count
Figure 1. Length distribution Histogram of the record lengths. provenance open workflow